rs48609411 SNP Detail

Summary

• ID
  rs48609411
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:80861090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCTGGTGG GAGTCTTTTA
  AAAATTTATT TTGCATGCAG GTCTGTGTGT TTGTGTGTTT GTGTGCAAGA CAGAAGAGGG
  GATCAGATCC CCTAGAGCTG GAGTTACACC TGGCATGGGT GCTGGGAATC AACCTTAAGT
  TCTCTGCAAG TACCCTACTA GCTTGTAGCC ACTGAGCCAT CTCTCATCCA TGGTGGGATT
  Y
  TTCACCTGCC CAGGAAGTTC TGGGGGACTT ATGGGTGGCA CCCGTCAGAA AGCTTTAGGT
  TGTTTCTGTC AGTGTGACCC ACCTTTTATA GTCACAGTCA CAGGTTTCAT GGGTTATGTT
  AAAGACCTAC AGGTAGATTC CAGCCAGAGG GGTGGTTGGT GGTGGTGGGA TGAATTCCTG
  TCCACAGCTC CAACACTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61026345	NES16101768	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48609411					SNP	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61026345	NES16101768	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80861090 () rs orientation: forward

Symbol	Name	Function Class
1700023D08Rik	RIKEN cDNA 1700023D08 gene	844 bp downstream
Cpgi19350	CpG island 19350	876 bp proximal
Gm44968	predicted gene 44968	555 bp downstream
Gm73624	predicted gene, 73624	within coordinates
Tssr67494	transcription start site region 67494	1916 bp upstream
Tssr67495	transcription start site region 67495	1945 bp upstream
Tssr67496	transcription start site region 67496	1981 bp upstream
Tssr73321	transcription start site region 73321	1783 bp downstream
Tssr73322	transcription start site region 73322	1859 bp downstream