rs48609470 SNP Detail

Summary

• ID
  rs48609470
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78430108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTACTTC CTGAGGAACA
  CAGGTGAGTT TGGGAAGAGG CGAGAACGTA TGCAGATGAA ATTCACCAGA CAGAAAGAAC
  ATGTCCAATA GGATCTGAGG CAGTGCCTGA CCAGGACCCC CGATGGAATA ACAATTCGCA
  GGTGGTATTT CAGCCAGAGA CAAGCTTATT ACATGCCTTC TGGCTGGTCT TAGAAAAGCA
  R
  CCTTAAAGCC AGTAAATTTG GAAAAACTCC AAGAGGTTTT CCAGGACAAG CAGGAGAGCC
  CATCTCAGTT TTTAGAACGC CTCACAAAGG CCTTATTACA ATACACTAAG TTGTTACTAA
  GGTAAACAAT TTTAGATGAC CTACTTTTTT CCCAGAGCTG CCCCAACATA AAAGCTAAAC
  TTAGGCATTT GGCGAGGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136668089	ENSMUSSNP4042038	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss323016422	CHEV_9_78370633	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48609470					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78430108 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22070	CpG island 22070	1704 bp distal
Gm47430	predicted gene, 47430	669 bp downstream
Rr206776	regulatory region 206776	707 bp distal
Rr383643	regulatory region 383643	1617 bp upstream