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rs48611946 SNP Detail
Summary
  • ID
    rs48611946
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:118758958 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CTTTG GAGACTATGT GAGACTGTAC
    R
    GCCCATATAT CTGGCTGTCA CTTGT                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
ss147317323 ENSMUSSNP2418993 ENSEMBL ENSEMBL_Sanger f SNP G G G
ss320472658 CHEV_2_118754213 CHEVERUD SCREENING_POP f SNP A G
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
rs48611946 SNP G G G A G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:118758958 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Chst14 carbohydrate sulfotransferase 14 mRNA-UTR
Cpgi12099 CpG island 12099 1123 bp distal
Rr563380 regulatory region 563380 1953 bp distal
Rr563381 regulatory region 563381 1157 bp distal
Tssr19592 transcription start site region 19592 1923 bp downstream
Tssr19593 transcription start site region 19593 1902 bp downstream
Tssr19594 transcription start site region 19594 1869 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory