rs48612870 SNP Detail

Summary

• ID
  rs48612870
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96437538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCGTATC TCATTTATTT
  TAGTGTCTAA AATCTAGAGT GGATTTCAAT GCATCAATAA ACCGTCCTCA TTAGGATAAG
  GAAGAACTGC CTTCGACACT CTTTCAAGGC TGGGTTAGGG AAACGCTTAG GCTATCAACA
  GGGCACAGTG ACTCCTTCTG GAAGAAAGAA AAAATAAAAT TGTTTTAACA GAAATTTTAA
  W
  ACCTGCAATA ACGAGTTATT TATTCTACAT GATTGTATTC TAATTAGAGG AAGAGATTGG
  ACAGATAGAT CTGTAAAGAA CTGAAGGTGA ATTTACAGCT TATTTTACCC AGGACCGTCA
  GGAGGTCAGA GAAAGTTCTT CATGTCTTTG CTGAGTGAGA AACAAGTTAG AAACCTAAGC
  TCTGCAACAC TGTTGCGGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132681591	ENSMUSSNP7188065	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323821050	CHEV_11_96408026	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48612870					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96437538 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	within coordinates
Rr238061	regulatory region 238061	1663 bp proximal
Rr252639	regulatory region 252639	within coordinates
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	1989 bp downstream
Tssr104544	transcription start site region 104544	1317 bp downstream
Tssr104545	transcription start site region 104545	1279 bp downstream
Tssr104546	transcription start site region 104546	1263 bp downstream
Tssr104547	transcription start site region 104547	1231 bp downstream
Tssr104548	transcription start site region 104548	1131 bp downstream
Tssr104549	transcription start site region 104549	1114 bp downstream
Tssr104550	transcription start site region 104550	1063 bp downstream
Tssr104551	transcription start site region 104551	1023 bp downstream
Tssr104552	transcription start site region 104552	1015 bp downstream
Tssr104553	transcription start site region 104553	315 bp upstream