rs48612878 SNP Detail

Summary

• ID
  rs48612878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:83926080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCAAGAGG TGTGGACATA
  ACGGGACAAA TAGCTCATTT TTGACTAAGG GCACTGAGTT CTAACATTAC TATTGTGCCA
  AAAATGTACA GGCTGGGACC CCAAACACCC GCTGGTAGAG ATTCTGTCAT CTCCTCTGAT
  CTAGGAAGCA AAGGTTAGAG AACAAGAGTT CAGAGTCTCC TATTAACTTT CTAACAACCA
  R
  TCCCTCTGCC TTATTGTAGC CTTTACTAAC CAGAGAAAGG GGGTTTGGCT GTTAGACGCA
  GAAGTGGATC ACCTTCATGC AGGGCAGAGA AATGGCTGAT TTTGTGTATC TGCTTGGCCG
  GATTATAGCA GACAGGAGCC ATACCTTCAT CTCTCCATGC TCCTTAGCTT GCAGATCTCA
  AATGCTGAGA TGTCTTATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52400109	NES15262755	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48612878					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52400109	NES15262755	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:83926080 () rs orientation: forward

Symbol	Name	Function Class
Gm34113	predicted gene, 34113	within coordinates
Gm34184	predicted gene, 34184	within coordinates
Rr436092	regulatory region 436092	1987 bp distal
Rr436093	regulatory region 436093	506 bp distal
Rr436094	regulatory region 436094	371 bp distal