rs48613270 SNP Detail

Summary

• ID
  rs48613270
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67200293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGTT TACATTAAAA ATTTTAAATA
  W
  TTCTATTAAT TCTTTGAGCA TTTCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss144538473	ENSMUSSNP3797854	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss319761967	CHEV_1_67207708	CHEVERUD	SCREENING_POP	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48613270					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67200293 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Tssr7209	transcription start site region 7209	1741 bp downstream
Tssr7210	transcription start site region 7210	1702 bp downstream
Tssr7211	transcription start site region 7211	1663 bp downstream
Tssr7212	transcription start site region 7212	218 bp downstream