rs48614856 SNP Detail

Summary

• ID
  rs48614856
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56528038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATGGCTG TGAGAGAGAA
  ATAGAGAGTT GCTCAGCTGA GGTTGGTTCT CAGTAGTATC CACCCCTGGT GGCAGCATAC
  ATACATATCA GGTCAGTCTA AACTACCAAA GGGCCTGAGC CAACTGCGCA AGCTTGAACT
  CGGTGTCCTC CACCGTGAAG ACTCTTCATC TCTCTGAAGG CTTCTGTCTC TATGCAGGAA
  Y
  GTGCCCTACA ATGGAGCAAG AGATGCCAGT AAGGCATTAA AGGTGAAGAT GTGTTTTATT
  CAATTGGGCA TTTTTTCCAC CCTCCAACCC ATCCCAGTCT CCTCTGGCCT GGCTTCTCTC
  AAACAGCAAT GATTCTGTTC TTGGGAGTCC AGCTCTGCCT GGACCACAGC AGCAGAAGAC
  TGAGGAGAGG ACTCAGAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61809669	NES17749526	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48614856					SNP	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61809669	NES17749526	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56528038 () rs orientation: forward

Symbol	Name	Function Class
Rr272828	regulatory region 272828	38 bp distal
Rr284344	regulatory region 284344	563 bp proximal