rs48615038 SNP Detail

Summary

• ID
  rs48615038
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48494575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACTAAAG CTCCATTCAG
  GACATTAGCA GTCTGATCTG GGGCACACGG CTCTGACTCC TGAGCACAGC CCCCATGGAT
  GTCAAAATGA GCAGGTTTGT CCCAGGATGC TGAAGGCAAT AACAGTGACT ACATATACAC
  TCTTAGTGCA CACAAGGATC CAATGATTGT TGCTGCCTTT AGATTACCAC GATAGTTGAT
  Y
  GATGTGATTT GCTGTGCAGT GTTTGAATCT CTTTTTGTAA AACAAGCAAA CCTCTCTCTT
  TTTTTCCCTT CTTTGTGAGT ATTCATTTCA GACCACAAAT CAACTGTTTC TCCAGTTTTT
  AGAATCTCAG CCACCCATGT GTGGGTGTCA GCCCAGGGGA GTGTCTGCTC GCATCTCAGG
  CTGCCTGTAT CACTGACTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149207740	ENSMUSSNP1302642	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48615038					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48494575 () rs orientation: forward

Symbol	Name	Function Class
Csrp3	cysteine and glycine-rich protein 3	within coordinates
Rr646925	regulatory region 646925	141 bp proximal
Rr646926	regulatory region 646926	1953 bp proximal
Tssr72622	transcription start site region 72622	1165 bp upstream
Tssr72623	transcription start site region 72623	1153 bp upstream
Tssr72624	transcription start site region 72624	384 bp downstream
Tssr72625	transcription start site region 72625	411 bp downstream