rs48615269 SNP Detail

Summary

• ID
  rs48615269
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:98885452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCCCCTG TGAAGTACTG
  AAGCTGTCCA TGACCAACAT GTATGCCTTC CTGAAACCAT GACCTTCACA CAGACTACCT
  CACTGGGACC TTCTCACAAA TTCCATCTCT AGAGTCCCTT CTAGGGAAAC ACAGATGGAC
  CAGTATTAAT CATCACTATA AAACTTATAA TCTTCATAAT TAGTCACTTC CAAGATGCAA
  W
  AATTCTAGAA GGATTGCTTA GAAAATGAGA CTAGAAATAT TCACAATCCA TTCCTTTGTT
  CTGAAATGTA GACGTCGGGT TGAAATCTGC AAAAGCTACC TGGGTTAAAT ATAATGTTTG
  CATTGTGATT CTCTAGTGGT TTCAGGAAAC TGCAAAAGGT CTGTGTTTAT TGATTGTTAT
  CTGTGAGAGA AAGTGTAGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61685135	NES17645798	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48615269					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61685135	NES17645798	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:98885452 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4974	CpG island 4974	1215 bp proximal
Rr403444	regulatory region 403444	1024 bp upstream
Rr470976	regulatory region 470976	891 bp proximal
Rr470977	regulatory region 470977	1217 bp proximal
Tssr114655	transcription start site region 114655	1338 bp upstream
Tssr114656	transcription start site region 114656	1374 bp upstream
Tssr114657	transcription start site region 114657	1427 bp upstream
Tssr114658	transcription start site region 114658	1451 bp upstream
Ttc8	tetratricopeptide repeat domain 8	1381 bp upstream