rs48616157 SNP Detail

Summary

• ID
  rs48616157
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:25208946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCCTACA CCTCATATTG
  TTAAGAATAA TAATGAGATA GATTTGTAGT CCTTTTTTTT TTCTTTCTTA ATATCAATGT
  AATTTTTTAT TCTGTGTCCA ATATGGGATG GTTTAACAGT AATTTTTGAC AACCAATTTG
  ACTAATATAT ACATAGTACA TTATTCTTAA AATTTCACCC AAAAAGCAGT TATTTATCAC
  R
  TGCTTTGGTA ATACTGTTTG AGTAATAATT TTCTGGATAA TTATTGCTTG GCTGGTAAGA
  GTTAATATAG ATAATTTTTT GTTAATATGT TGAATATTAT AAATTATTAT TGAATTGTGA
  GTACTGTAGA GATGTGTTTA CAATATCACT TTATTTTATA GGACCGTTTA CCTCTTGCTG
  TGGTAGGTAG TAATACTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61362700	NES16739080	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48616157					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61362700	NES16739080	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:25208946 () rs orientation: forward

Symbol	Name	Function Class
Septin7	septin 7	within coordinates
Tssr84136	transcription start site region 84136	152 bp upstream
Tssr84137	transcription start site region 84137	177 bp upstream
Tssr84138	transcription start site region 84138	225 bp upstream
Tssr84139	transcription start site region 84139	1830 bp upstream