rs48616601 SNP Detail

Summary

• ID
  rs48616601
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58893125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACC AGAACAATCC AGGATTAGCT
  C
  GGAGCAGGGA TCCGGGCTTT GTTAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss132221327	ENSMUSSNP4454408	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323695600	CHEV_11_58815801	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48616601					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58893125 () rs orientation: forward

Symbol	Name	Function Class
Gm10435	predicted gene 10435	611 bp upstream
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Tssr101782	transcription start site region 101782	621 bp upstream
Tssr101783	transcription start site region 101783	658 bp upstream
Tssr101784	transcription start site region 101784	675 bp upstream
Tssr108189	transcription start site region 108189	106 bp upstream
Tssr108190	transcription start site region 108190	68 bp upstream
Tssr108191	transcription start site region 108191	56 bp downstream
Tssr108192	transcription start site region 108192	75 bp downstream
Tssr108193	transcription start site region 108193	92 bp downstream
Tssr108194	transcription start site region 108194	122 bp downstream