rs48617292 SNP Detail

Summary

• ID
  rs48617292
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92490750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTGTTTG TGGCAGTATC
  ACGATGGGGT TTTGGTTTTG TTTCTCTTTG CTTTGCTTTG AACTATCTGA TGGGCTGCAA
  GCAACAGGAA GTAGCCAACT ATAAGCATGT ACAGAAACTT CATCCATCTA AATGCTTACA
  CTGGAAATCT GTACAGTAAA ACGATATTCT GGCACGGGGA TCAGAAAGAC AGAGCACATG
  K
  TTTTGAATTC TGAGAAACTA GCCTTAATGA CAGCTTTCTT CTAGTCAGCC AAGCAAGCAT
  ATGTAAATAA AGCTCCTCTT CAACCATCAA TACAGTAGGG AAAATGTAAA GGAAAGAATG
  AAGAACAGAG GTTAAAAAAC GCATCCTGGG CCGGCCGGCC AGTCCTCGCC ATTCACCACG
  ATAGAAGTTT CTGGCTCGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52680815	NES15522616	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48617292					SNP	G	G	G	G	G	G	T	G	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52680815	NES15522616	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92490750 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5933	CpG island 5933	131 bp proximal
Dhfr	dihydrofolate reductase	541 bp upstream
Msh3	mutS homolog 3	within coordinates
Rr403896	regulatory region 403896	258 bp upstream
Rr483661	regulatory region 483661	within coordinates
Rr483662	regulatory region 483662	275 bp proximal
Rr483663	regulatory region 483663	425 bp proximal
Rr483664	regulatory region 483664	733 bp proximal
Tssr120622	transcription start site region 120622	506 bp upstream
Tssr120623	transcription start site region 120623	897 bp upstream
Tssr120624	transcription start site region 120624	944 bp upstream
Tssr120625	transcription start site region 120625	970 bp upstream
Tssr120626	transcription start site region 120626	997 bp upstream
Tssr123429	transcription start site region 123429	261 bp downstream
Tssr123430	transcription start site region 123430	701 bp downstream