rs48617779 SNP Detail

Summary

• ID
  rs48617779
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20578305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGT ATAGCCCTGG CTGTCCTGGA
  R
  CTCACTTTGT AGACCAGGCT GGCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136223780	ENSMUSSNP7009330	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48617779					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20578305 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21396	CpG island 21396	1131 bp proximal
Olfm2	olfactomedin 2	681 bp downstream
Rr674553	regulatory region 674553	61 bp distal
Rr674554	regulatory region 674554	97 bp distal
Tssr88321	transcription start site region 88321	844 bp downstream
Tssr88322	transcription start site region 88322	915 bp downstream
Tssr88323	transcription start site region 88323	990 bp downstream
Tssr88324	transcription start site region 88324	1035 bp downstream