rs48619362 SNP Detail

Summary

• ID
  rs48619362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130552960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGCATGTGGG TGACAGCCAG GACTGGCTGA GCAGATCTGC
  AGCAAGAGCT TAGGATGCTG GGGCCAGACC CCCTGGGCTT GGCTTAGCTA CTCATCAGGC
  Y
  TCCTGGCTGG GGCTCGAGCT TCAGAGAGCA GAGCCAACGC TGCTCTCAGG GCAGTTGTGG
  CTCCCTGGGC TGTCCTGGCT TTCTCCTGGG ATGTGCCTCC C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147462506	ENSMUSSNP2220710	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48619362					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130552960 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	within coordinates
Sdc3	syndecan 3	within coordinates
Tssr39290	transcription start site region 39290	1997 bp downstream
Tssr39291	transcription start site region 39291	1851 bp downstream
Tssr39292	transcription start site region 39292	1768 bp downstream
Tssr39293	transcription start site region 39293	217 bp upstream
Tssr39294	transcription start site region 39294	372 bp upstream
Tssr39295	transcription start site region 39295	538 bp upstream
Tssr39296	transcription start site region 39296	564 bp upstream