rs48619584 SNP Detail

Summary

• ID
  rs48619584
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99512256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGCGCGG AATGGGGGAT
  GTCTGACACC CAACCCTCGG CGTTTTCAGG AGTGTGGTCT TGGGAAATGC AGTTTTTGAA
  AACAGTAAAG CGATCTAAGG GACTGCAGAT CCGAGTTCTG TGGGAAGTGG GGTTCGGTTA
  CTAACGAGAT GATTTTTAAA TAAAGATTGG CGTGTCTAGG TTCCTCCGCT TCCGGTCCCG
  R
  GCTGAAGTTT AACGGGAGCA CAGACTTAGG GGTGGATGAG AGTAGAAGTC CACAGGGCAA
  GTGTGTACCA GGCAGGATCA GAGGACAGGG CCTGGTAGAA TTGCCTTCAC AACGGTCCTG
  AAGGGCCCAG GGCCGGTGCT GTCCTGGCCA TGTCTCCAGG AATTGGTTTC TAACAGGATT
  AGGCCTAGGG AGTGTGAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61443438	NES16824761	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48619584					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61443438	NES16824761	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99512256 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22198	CpG island 22198	82 bp distal
Dzip1l	DAZ interacting protein 1-like	within coordinates
Gm68333	predicted gene, 68333	within coordinates
Rr206941	regulatory region 206941	within coordinates
Tssr86687	transcription start site region 86687	611 bp downstream
Tssr86688	transcription start site region 86688	350 bp downstream
Tssr86689	transcription start site region 86689	327 bp downstream