rs48619774 SNP Detail

Summary

• ID
  rs48619774
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:183848693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCAGGGCA CCATGGCTCA TCTTTACAGA GAAAGAAACC
  AAGCGTGGAT GACTGGAAAA CAAGCAACTC CTGGGCTATA AAATGGTGTT ATAATTTAGA
  R
  TAGTGTCCAG TAAAGCTATT AGTAATTGCT GCTTGGTAAA CCTGCAAGAT AAGTGGGCAG
  GATGCAGTGG TTACACAGAC TCTGAATTTG AAAATGCTGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60352429	NES15852841	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48619774					SNP	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60352429	NES15852841	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:183848693 () rs orientation: forward

Symbol	Name	Function Class
Gm69596	predicted gene, 69596	1778 bp upstream
Rr425179	regulatory region 425179	1527 bp proximal
Rr425180	regulatory region 425180	1789 bp proximal
Tssr10581	transcription start site region 10581	1776 bp upstream