rs48620093 SNP Detail

Summary

• ID
  rs48620093
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40553635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GATCCCAAA TCTCCTGTGG TTCATGATGT
  CCTGCTTTTC TCTTCCAAAA ACAGTTTATA AAGGACACAT TAAGCTTCGA AGGAAAAGCT
  GTTGATGAAT TCACTTCAGG AGACCACACT GGCAGTAACT TTGGGCTTAA CTTTAAGGTC
  K
  ATATTCAGAT CTCTGAGGTT TGATAAGGAC ACTCCCAACG CCCAGGCACT CTGAATGTAC
  CTCAGCCTGA ATTAAACCAT TATCATGAAC AATGCCTGGT CTATCCGTTT CCCCTTCATC
  CTCAGTATTC CTCCTTTAAT CCCATTTAGA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60721446	NES16360414	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	T	T	G	T	T	T	T			T	T		T
ss148982847	ENSMUSSNP2352601	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G										T
ss319698412	CHEV_1_40571320	CHEVERUD	SCREENING_POP	f	SNP												G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs48620093					SNP	T	T	G	G	T	T	G	T	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60721446	NES16360414	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40553635 () rs orientation: forward

Symbol	Name	Function Class
Il18rap	interleukin 18 receptor accessory protein	913 bp upstream
Rr410075	regulatory region 410075	439 bp proximal
Rr410076	regulatory region 410076	898 bp proximal
Tssr65	transcription start site region 65	1020 bp upstream
Tssr6477	transcription start site region 6477	902 bp upstream
Tssr6478	transcription start site region 6478	967 bp upstream
Tssr6479	transcription start site region 6479	996 bp upstream
Tssr11438	transcription start site region 11438	740 bp downstream
Tssr11439	transcription start site region 11439	1972 bp downstream
Tssr11440	transcription start site region 11440	1982 bp downstream
Tssr11441	transcription start site region 11441	2000 bp downstream