rs48620653 SNP Detail

Summary

• ID
  rs48620653
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34933174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGGCAGG AACTGATCAA
  AACAAACAAA CAAACAAACA ACACACCCAG ACCCGTAGGA GAAGCAGAAA GAATTGCCTC
  CCGGACAAGC AAATTGTCAA CTTAACCGTA GTGGTCAAGT CGAAATCAGT ATTCTTAAAT
  TTCGGTCTTT TGCCCAGCTA GAAAGAAGCC CCACAACCTC TCATATAAGC CTGAGAGCGG
  Y
  GGCGCTGACA TATCCCCCCC ACCGCACTGT GCAATATCCT GTGCTGCCTT ATCGAACCAA
  AAGCCCAAGC GTGTTCCACT GTGTGGGTTA ATGAAAGTAC GTTCTTTGTC CCTTTTCAGC
  TTAGGACATT TTTTTTTCTA TTACATTTAC CTATTTGTTG TGAACACATT TGTGCTCATA
  CGTGAGCCGC GGCGTACATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60993606	NES16129825	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48620653					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993606	NES16129825	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34933174 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18864	CpG island 18864	810 bp proximal
Gm38989	predicted gene, 38989	within coordinates
Gm73040	predicted gene, 73040	1600 bp upstream
n-TTagt9	nuclear encoded tRNA threonine 9 (anticodon AGT)	1021 bp downstream
Rr645337	regulatory region 645337	364 bp distal
Rr645338	regulatory region 645338	6 bp proximal
Rr645339	regulatory region 645339	882 bp proximal
Rr645340	regulatory region 645340	944 bp proximal
Rr645341	regulatory region 645341	1611 bp proximal