rs48621290 SNP Detail

Summary

• ID
  rs48621290
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106104495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATGGTAT TCTTGATGTC
  ACCTAAACTT AGGTTTAAAA AAGTTTTTAT TTTTTCATTT CCTTTTTCTG AACAGTAACT
  CTTAATGTGG TATCTAAGGC AAAGCGTGTA AAGGGAATCT ATTAATTCCC CAAACACATC
  AGGCTTATTT TGTTCTGTTA TAGAGCCAAA TGTATGTTTC TCCAGGTTAG CTCTGTTTCG
  W
  TTGAATTTAG GGCAGGTGGC TCGCATGTCT CCAGCTAATT TTTGAGCTAT TATTTTCCAT
  ATGGTGGCAG AGATAGCAGG AGTGAGCTTG CGCCATAGGA AGTCAACAAA GGATGTGATT
  GCGGTGGCAC CTTGGCAGGA GATCTTAAAA CTAATAAAAA AATGGTCTTT CTTTCTCTCC
  AGATAGTTCA CAGGGTCATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322371908	CHEV_7_113648802	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48621290					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106104495 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr68401	transcription start site region 68401	1650 bp downstream
Tssr74117	transcription start site region 74117	1762 bp upstream
Tssr74118	transcription start site region 74118	1715 bp upstream
Tssr74119	transcription start site region 74119	1317 bp upstream
Tssr74120	transcription start site region 74120	1300 bp upstream
Tssr74121	transcription start site region 74121	1237 bp upstream
Tssr74122	transcription start site region 74122	1220 bp upstream
Tssr74123	transcription start site region 74123	1187 bp upstream
Tssr74124	transcription start site region 74124	1142 bp upstream
Tssr74125	transcription start site region 74125	1131 bp upstream
Tssr74126	transcription start site region 74126	1095 bp upstream
Tssr74127	transcription start site region 74127	944 bp upstream
Tssr74128	transcription start site region 74128	864 bp upstream
Tssr74129	transcription start site region 74129	333 bp upstream
Tssr74130	transcription start site region 74130	284 bp upstream
Tssr74131	transcription start site region 74131	73 bp upstream
Tssr74132	transcription start site region 74132	53 bp downstream
Tssr74133	transcription start site region 74133	752 bp downstream
Tssr74134	transcription start site region 74134	979 bp downstream
Tssr74135	transcription start site region 74135	1062 bp downstream
Tssr74136	transcription start site region 74136	1130 bp downstream
Tssr74137	transcription start site region 74137	1196 bp downstream
Tssr74138	transcription start site region 74138	1226 bp downstream
Tssr74139	transcription start site region 74139	1260 bp downstream
Tssr74140	transcription start site region 74140	1315 bp downstream
Tssr74141	transcription start site region 74141	1715 bp downstream
Tssr74142	transcription start site region 74142	1858 bp downstream