rs48621444 SNP Detail

Summary

• ID
  rs48621444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118786606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGAAAGAG CAGGGGTATG GTGAGAGAAG GGCAGACAGC
  AGCCCCAAGA GAGTGAGAAA GAACTCTCTA TTACCTCCTG GCCCCCTTGG GATGATTGGC
  Y
  AGTTAGAGTT CCTCAAGGAA ATGTATGCTT GCATGGGAAT GTACCTAAGG TGTTGAGGCT
  GGCTTGGGAT GCTCTTAGTC TTGGGGTAAG AGTGTATGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145804531	ENSMUSSNP6392640	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48621444					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118786606 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19632	CpG island 19632	1824 bp distal
Gm73654	predicted gene, 73654	1175 bp downstream
Rr381384	regulatory region 381384	256 bp downstream
Rr654601	regulatory region 654601	1320 bp distal
Rr654602	regulatory region 654602	692 bp distal
Rr654603	regulatory region 654603	795 bp distal