rs48621684 SNP Detail

Summary

• ID
  rs48621684
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:134131676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGGAACCT GGATCCAGAA TCTTTGTCTT GAGCCATCTC
  CCTAAGTAGA GACACTAGTA ACAGCCCTTC GCCTGCTTTC TCTTCCCTCT TCACATCTGT
  M
  CGTTCATCTC TTCCTGGAAT GTCCCCTACA CCCCTGTCAG TTCCACTTCA GCCCTCAAGA
  TTAGTGACGT CACCCCGAAG CCTCCCCAAG CACTCCCCTG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss60846901	NES16014317	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs48621684					SNP	A	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60846901	NES16014317	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134131676 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Castor2	cytosolic arginine sensor for mTORC1 subunit 2			Intron
				Noncoding-Transcript-Variant
Rr621934	regulatory region 621934			within coordinates
Rr621935	regulatory region 621935			1083 bp proximal