rs48621871 SNP Detail

Summary

• ID
  rs48621871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61179847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACGAGTAG GAGAGAGTAA
  GGAACAGGAT TTTTCTGCCC CGATGGAGAT AGCGAGCCCA GGTCTGGGTT GGAAGCAGAG
  AGAGGAAATG GGGGTGGGGG CAGAAACACT CACACGGACC TGTTCTTGGC CCTCCCAACC
  CTTCTCAGGG GCAACACACA CACAATCTCC CTACATTCCC CGTCCCATGG TGTCCCTGTG
  Y
  CTGGGGTAGG AGGGCAGGCG CTCCCTCAGC CCCACCTGCT CATGCAGATA GTAGTTAAAT
  AGGAGCAGAT AGAAGTACAG CTCCAGGCTC CACAGCGCCC TCTGCTGGAC AGCTTGCTGA
  CTACCACATT CCTGAGGACA GGGAGAGGGA AGGGAGAAAC CGGGTGTTAA ACATGGGGCT
  GCCCCCCTAG ATGTGTGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52341785	NES15287679	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	C	C		T
ss323328390	CHEV_10_60806816	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48621871					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52341785	NES15287679	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61179847 () rs orientation: forward

Symbol	Name	Function Class
Pald1	phosphatase domain containing, paladin 1	within coordinates
Rr215532	regulatory region 215532	1847 bp distal
Rr215533	regulatory region 215533	within coordinates
Rr228161	regulatory region 228161	within coordinates
Rr228162	regulatory region 228162	554 bp proximal