rs48621961 SNP Detail

Summary

• ID
  rs48621961
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165955354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCCCTGAT AGCTAGTCCC AGCTATGGCT GTGGCCTGAC
  ACTCAGGGCA GACTGGCACC CCTGAAGTCT AAGTCCCAGC TCACCACAGA AGGGAACGAA
  Y
  ACTCACCTTG TGCTGGTGTG TCCTCACCAA GGACCAAGAA CCCCAGGAAA GTGACCAGAA
  GTTTGGTCTA GAGAGGGACG GGAGCTTTCT CTTCTCTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146013158	ENSMUSSNP5562188	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48621961					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165955354 () rs orientation: forward

Symbol	Name	Function Class
Gm70591	predicted gene, 70591	1694 bp downstream
Rr28891	regulatory region 28891	within coordinates
Rr372394	regulatory region 372394	619 bp downstream
Styxl2	serine/threonine/tyrosine interacting like 2	within coordinates
Tssr9858	transcription start site region 9858	785 bp downstream
Tssr14809	transcription start site region 14809	925 bp upstream
Tssr14810	transcription start site region 14810	564 bp upstream
Tssr14811	transcription start site region 14811	91 bp downstream
Tssr14812	transcription start site region 14812	120 bp downstream
Tssr14813	transcription start site region 14813	145 bp downstream