rs48622406 SNP Detail

Summary

• ID
  rs48622406
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:83725563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGATTTC ATTCTACCTG
  GAACAGAATG AAGGATTCTT ATGGCATTAG CGCTTTTACA GAAAGCCCTG GGATATGGAC
  TAGGGTCATA GCTCAATCAG TGGAATGTTT ACCCAGCATG CACAGGACCT TGGATTCCAT
  CCCCAACACC ACATAAACTG GGTTTGCAGT CATACTCCTA AAATCTCAGT ACTTAGGAGA
  W
  AGAGGCAGGA GGATAAAAAA AATTCAGTTA TCCTCAGCTA CACAGTGAGA TCTAGGCCAG
  CCTGGGATGC ATGAAACCCT AGAGAAAGGG AGGAGAGGAA GAAGTCAAAG TCACAGGCAC
  AGTGCAGTGT AACAAAATCT GCAGAAGGCC CTCATATCAG CCACCAGCTT CTTCCTGGGC
  TCATTTTCCA AAGGACTGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145200244	ENSMUSSNP5442127	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48622406					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:83725563 () rs orientation: forward

Symbol	Name	Function Class
Cemip	cell migration inducing protein, hyaluronan binding	within coordinates
Tssr73416	transcription start site region 73416	1208 bp downstream