rs48622638 SNP Detail

Summary

• ID
  rs48622638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104702138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCATGTTT GGCAGACTGC
  CTGGGTGGGT GAGGGGAGTG GTCTGGACCA TTGGCTAAAC ATAGATGCCT GTGGGTTGGT
  TCCCTGTCCA TCGGGTTTCC TCCCCGCTAA GCAGCTATGA AGGGGCGTGG CTCTAGGCAG
  AAACCCTCCT GGAGGGTCAT CTTGGGGGCA CAGGAAGCAA GACCAGGCTG ATGAGACACA
  Y
  GCAAGAGGCT TTTGCATAGA ACAGCATTTT GTTTTTCTTA AAGCAGCTCA GGGGCAGAGT
  GCTTGCCTAG CATATTTGAG GCTCTGGGTT CGATCCCCAG CACTGCAAAG GAGAGGGTTT
  AAAAAAAAAA AAAAGCTTTC TTCCTCCCCC TTCCTCCGAG TTTTAGCAGC TTGGGTTGTC
  TTCCCTAGCA GAGGAAGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60431833	NES15936299	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48622638					SNP	C	T	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431833	NES15936299	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104702138 () rs orientation: forward

Symbol	Name	Function Class
Gm66976	predicted gene, 66976	261 bp upstream
Mov10	Mov10 RISC complex RNA helicase	14 bp downstream
Rhoc	ras homolog family member C	363 bp downstream
Rr77010	regulatory region 77010	within coordinates
Tssr31060	transcription start site region 31060	781 bp downstream
Tssr31061	transcription start site region 31061	712 bp downstream
Tssr31062	transcription start site region 31062	517 bp downstream
Tssr31063	transcription start site region 31063	1073 bp upstream
Tssr34891	transcription start site region 34891	363 bp upstream