rs48622957 SNP Detail

Summary

• ID
  rs48622957
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:96080320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCC ACGCCTCTTT TCTCTGGAAG
  Y
  CGGGCTGACG TCCATATGCT GGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss60651678	NES16269088	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C		T	C		C	C		C
ss145643143	ENSMUSSNP2724099	ENSEMBL	ENSEMBL_Sanger	f	SNP						T
ss322811409	CHEV_8_97877592	CHEVERUD	SCREENING_POP	f	SNP									C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs48622957					SNP	T	T	C	T	C	T	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60651678	NES16269088	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96080320 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20872	CpG island 20872	within coordinates
Mmp15	matrix metallopeptidase 15	within coordinates
Rr668226	regulatory region 668226	1414 bp distal
Rr668227	regulatory region 668227	within coordinates
Tssr78982	transcription start site region 78982	1441 bp downstream
Tssr78983	transcription start site region 78983	1363 bp downstream