rs48624181 SNP Detail

Summary

• ID
  rs48624181
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88277307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCCTTTT TTCTCTTTCA
  TCTAGTGTTA TGGGGCTGAA AGGGTGGAAT GAAAGGAGGT GAGAAGCCAA TTTTGAATTA
  TCCACTGTTA AGGCCCAGGT AACTGCTACC TGTCTAGCCT GCTATTTCAT GCTGTTACTA
  ATGTCAGAAG GAAGCTTTCT CATATGCTGT TATTGCTGCT ACTAGGATGT TTTGGCCCTT
  R
  GTAGTTTTTG GAAACCAGTC ACAACAGAGG TCAGTTAGAG CTGCTTTGTA CATTTAGCCA
  CAAAAAGCTT GGACCCGAAC CAACTTCCAG ACAGCACTTC CTGTACCTGT ATATGAGCTT
  TTATGGTCTT TGCCTTTCTA AGCTGCCCCT GGGATGGACC CCAATATAAG AGAGACAGCT
  GCACCAATAT AAGAACCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60289481	NES15800001	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	A	A	G	A	A		G	A	A	A		A
ss325500516	CHEV_17_88369219	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48624181					SNP	G	A	G	A	A	A	G	A	A	G	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60289481	NES15800001	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88277307 () rs orientation: forward

Symbol	Name	Function Class
Gm50041	predicted gene, 50041	659 bp upstream
Rr333904	regulatory region 333904	907 bp distal
Rr343663	regulatory region 343663	308 bp distal