rs48624510 SNP Detail

Summary

• ID
  rs48624510
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:52694514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGACAGGG TAGCAAGGCT
  CCAAGCTATC CACCATGAAG CTATCTCCTC ACAGCCATTG AAGCAACAGT TGCACCCAAG
  TAGCACTCGG CAGAAAGGCA GAAAGGTTAT CCAGAAACAC CTACAGCAGA TGCACAGGAC
  CTGGGCACAG AGGAGGCCTG AAGCAGTCAC TCTCCAATCT GACTGGGTAC CTTCAGCCCA
  R
  CGTTGAAGCC CTGGTTATGA GATAACATAC CGAATGTTCT GTGTAGGGTA GATGCTTGGC
  AAAGGCTATG TTGTGATTAA TCCTTTAAGA AAGCAGGCTA AGCCAGAATC TACAACTTCA
  TCTCTGAGCC TTTAACACTG AGCATACAGG CTCTGGGACT TGGAGAGCCT AGCAATTCAG
  CTCATCTCTA CTTACTTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61797310	NES17723972	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48624510					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61797310	NES17723972	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:52694514 () rs orientation: forward

Symbol	Name	Function Class
Rr272475	regulatory region 272475	1314 bp distal
Rr284095	regulatory region 284095	within coordinates