rs48625875 SNP Detail

Summary

• ID
  rs48625875
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92040841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATCTCT CTTTGATTTC
  CTATCACCTT CAGGATACAG CCCCTGCTGT TGAGCTGTTT AGCTGTTCAA CCGAACACCT
  AGGGCCCCTG CTGATCTGTC ATCCTTCTCT CCAGAGGCCT CTGTTTCCTC ATCTGCTATC
  ACATCCTCTG CTCTGTTGCT TCTCCGTTTG CACATTTGTT CTGAGACAGT GGTGAGCAGG
  R
  GACAGGAAGG AGGCACAGGC AACTTGAAGA TTCCATGTCT GGATGAAGGC ATGGTGATGC
  CACCACTCGC ATAAGAAGCC CCAGAACCAG GCTTAACAGT ATTACTGGGT CTAGAGCACA
  AGGCTGTGGC TGTCCTACTA TGGGAGATGT CTGGGTCTGG AGCCTGGGGT TGAATCTTCA
  ATTGGAGTGC CCTCTGTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61925401	NES17107774	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48625875					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61925401	NES17107774	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92040841 () rs orientation: forward

Symbol	Name	Function Class
Rasgrf2	RAS protein-specific guanine nucleotide-releasing factor 2	within coordinates
Rr274007	regulatory region 274007	360 bp proximal
Rr280536	regulatory region 280536	496 bp proximal