rs48625876 SNP Detail

Summary

• ID
  rs48625876
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38937968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT ATGTGATGGA GTAGTGAACT
  A
  CGCAGGATTA GCAAACAAAA CTAAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134846111	ENSMUSSNP6355369	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320724083	CHEV_3_38782741	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48625876					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38937968 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	1163 bp proximal
Gm56780	predicted gene, 56780	1870 bp upstream
Gm65329	predicted gene, 65329	847 bp downstream
Rr575715	regulatory region 575715	502 bp distal
Rr575716	regulatory region 575716	794 bp distal
Rr575717	regulatory region 575717	within coordinates
Rr575718	regulatory region 575718	654 bp proximal
Rr575719	regulatory region 575719	1717 bp proximal
Tssr28930	transcription start site region 28930	1493 bp upstream
Tssr28931	transcription start site region 28931	1864 bp upstream
Tssr28932	transcription start site region 28932	1891 bp upstream
Tssr28933	transcription start site region 28933	1923 bp upstream