rs48626390 SNP Detail

Summary

• ID
  rs48626390
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34444258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTATAGGAA TCTACAAATA TGGTAGTTGA GAAATCCAGC
  CATGCTGTAG AAAAAAGAAA TAAAAATTCA TTCTCCCCTA CTTAGATGGC ATAAAGAAAC
  G
  CAAAACTAAT TTTTAAACAA AGGAAAACTT CTGAGTATGA TGGAGGAAAT ATAAAGGCTC
  AGCGTTTTCC TAATGATGTC TTAACCAGTT TTGAAGCTT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146939015	ENSMUSSNP4199988	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48626390					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34444258 () rs orientation: forward

Symbol	Name	Function Class
Apc	APC, WNT signaling pathway regulator	within coordinates
Gm54017	predicted gene, 54017	within coordinates
Tssr150452	transcription start site region 150452	1593 bp upstream
Tssr150453	transcription start site region 150453	1955 bp upstream
Tssr150454	transcription start site region 150454	1980 bp upstream