rs48627403 SNP Detail

Summary

• ID
  rs48627403
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20821107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTCTTTG CACCTTAAAA
  CAGCCAGAGA AACCAAATAC ATTCAAACAA ACCATCCATG TAGACCACCA TCTGATCCTC
  GAATCCAGCG GGGCAATGGA AGCTGCCTCA TCCATAGCTT CCTCCTTCCT GGTGTGCTAT
  TGTGCCTCTG TCCAACAAAA GAAATGAACC TCCTTGCTGT GGCGGCCCCT GAATAGGCTG
  S
  GTGTGGAAGA TCTCCATTCA GCTATGTAGG AATAATAATA ATACCAGCCT CCCAGGCTCG
  TCACAGCATC AGCACGGTAA TGTAAAGTCC TTAAAGTACA ACTTTATCAG GTTCTCACAG
  TTACTCTTCT GAGCCAGTTT CACAGTGGAA AGGCAGATTC TAATAAATGA TTTGCAAATG
  GGAAATTTTG AAAGCTTCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61757487	NES17681622	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48627403					SNP	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61757487	NES17681622	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20821107 () rs orientation: forward

Symbol	Name	Function Class
Rr275299	regulatory region 275299	307 bp distal