rs48628614 SNP Detail

Summary

• ID
  rs48628614
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:28683933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAAAGTGA ATTATAATAA AAATAAACAC AAAACAATGA
  GCTAATAATA AAGCCAACAA ATCTCAACTA CTTTAAGTAC AAAAATACCC ATGTCGCCAC
  S
  TTCACAACAG CCCACCACTC AGCACAAATT GCCAGCAGCA TTCCTCTTTC CCATCAGCCC
  TACTTCATTC ACCCTGCACA CTGCACCAAA GCCAATCCT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52348270	NES15378183	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	C	C	G	C	G		C	G	G	C		C
ss137502156	ENSMUSSNP6758876	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						G
ss323971705	CHEV_12_29318799	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48628614					SNP	G	G	C	C	C	C	C	C	G	C	G	G	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52348270	NES15378183	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28683933 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4510	CpG island 4510	1331 bp proximal
Rps7	ribosomal protein S7	within coordinates
Rr265285	regulatory region 265285	67 bp proximal
Rr369505	regulatory region 369505	1863 bp upstream
Tssr116014	transcription start site region 116014	1299 bp downstream
Tssr116015	transcription start site region 116015	1898 bp downstream
Tssr116016	transcription start site region 116016	1909 bp downstream
Tssr116017	transcription start site region 116017	1933 bp downstream
Tssr116018	transcription start site region 116018	1957 bp downstream
Tssr116019	transcription start site region 116019	1980 bp downstream