rs48629212 SNP Detail

Summary

• ID
  rs48629212
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40507219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCACAGGG GATCTATTTG
  GGAGACAGCC TCAGCGGCCT GCCGTTTACT ACTCAAAGAG GCTAATAAGA ATTCATTTGG
  TGCTGTCTTC AGGTGAAGGC ACAGAGGCTA AAGGACCGCG GCCATTTCTT CCTGTTATGC
  AATCATCTGT GGCAGCCAGA CATGACCTCT GTGTCTGCTC CCTAGAGTCC CGGGAGCAGA
  R
  GTCACAGCTC GGCTGCTTCC CAGGACTAGC TTACCTCCTC AGCAGTCCCT AGAATGTGCC
  CATAGGGAAA AAGTTAGGCA AGGGCACTAT GACTAGAATT CTACCCCCGA ATGCCATGTG
  ATTAGTGCTG GTGAGCACGG CAGGCAAACC TAGGCTGATT CTGTTTTGGT AGCAATTGCC
  CGTAGAGAGA CCTCGAAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61273381	NES16894439	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	G	A	A	A	A	A	G
ss147067420	ENSMUSSNP4795571	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A					A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48629212					SNP	G	A	A	A	A	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273381	NES16894439	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40507219 () rs orientation: forward

Symbol	Name	Function Class
Ddo	D-aspartate oxidase	within coordinates
Tssr93026	transcription start site region 93026	1170 bp downstream
Tssr93027	transcription start site region 93027	1160 bp downstream