rs48630258 SNP Detail

Summary

• ID
  rs48630258
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28391973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGA AGTTCTAAAA GTTCAGTTCC
  S
  GACAACCACA TAAAGGCTCA CAACC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148635390	ENSMUSSNP756835	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss322126000	CHEV_7_29477567	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48630258					SNP	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28391973 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18715	CpG island 18715	511 bp proximal
Fbxo27	F-box protein 27	301 bp upstream
Tssr65494	transcription start site region 65494	268 bp upstream
Tssr65495	transcription start site region 65495	307 bp upstream
Tssr65496	transcription start site region 65496	455 bp upstream
Tssr65497	transcription start site region 65497	464 bp upstream
Tssr65498	transcription start site region 65498	484 bp upstream
Tssr65499	transcription start site region 65499	1449 bp upstream