rs48630973 SNP Detail

Summary

• ID
  rs48630973
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21425439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAG GGCCATGCTG GATAAAAGCC
  Y
  GCAGGGCAGA ACTGGCACCT ACAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss52314511	NES15371712	PERLEGEN	MM_PANEL2	f	SNP	C	C	C			T	T	T
ss137298250	ENSMUSSNP1445987	ENSEMBL	ENSEMBL_Sanger	f	SNP				C
ss323931443	CHEV_12_21381299	CHEVERUD	SCREENING_POP	f	SNP					C				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs48630973					SNP	C	C	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52314511	NES15371712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21425439 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	1806 bp upstream
Cpgi4477	CpG island 4477	1231 bp distal
Gm49586	predicted gene, 49586	1092 bp downstream
Tssr112932	transcription start site region 112932	1659 bp downstream
Tssr112933	transcription start site region 112933	1181 bp downstream
Tssr115856	transcription start site region 115856	1946 bp upstream
Tssr115857	transcription start site region 115857	1920 bp upstream
Tssr115858	transcription start site region 115858	1892 bp upstream
Tssr115859	transcription start site region 115859	1846 bp upstream
Tssr115860	transcription start site region 115860	1821 bp upstream