rs48631049 SNP Detail

Summary

• ID
  rs48631049
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:68830406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTGCTT TGTCTTTTCC
  TTCAGTATTT GCTTTTGCTA TTTGATTCTC TCATAGATAA ATATCTCACT TTTATATGAA
  ATGATTTTCA TTCTCCTTAG CAATGCCTGT AGAGAAGGGC AGACCTTAGA TCTCAGCTAG
  AAAATCCTAG TCTGTAGGAA AGGCATGGAT AAATTCTCCC CACTGTGGAT GGACATTCTA
  R
  ACATATAAGA ACTCTATCAC CACTTGCCAA CACAGAGCCG TCACCTCAGC TCCTCACCTC
  TTGGCCTCAG ATTGTTACTT ATTTTATTGG CTTTAGAGGG GTTGGGTGCT AAGCTATCTG
  GTGTGGACCT GTTAGACACA TTCCCCTAGG CCTCAAGATG TGGCTGTTTT TCTTTTACAC
  TGAATTTACT TCTGAGTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss62443703	NES17255337	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48631049					SNP	G	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62443703	NES17255337	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:68830406 () rs orientation: forward

Symbol	Name	Function Class
Rr296117	regulatory region 296117	459 bp proximal
Tssr126359	transcription start site region 126359	1337 bp upstream