rs48631315 SNP Detail

Summary

• ID
  rs48631315
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89815130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAGAAAT GCCATATATA
  CTTTCTGTAG TAAGATTTTT AAAAGTTAAA TTATCTTTAT AACAACTTTA TTGTTATAAT
  TCTCATGATT AAAATTCATT TTTTTAAACT AAACACTTTT TAGTATGTTT ACAAATTTAT
  GTGACATAAC CCTACTTATG CTTTCATTTC CTATAATCTC TTCCTTTAGC CCCAATATCT
  R
  TCCTGTACTC TACTCAGTTA ATTATGTTTA CCTTCTGGTT ACTTTGAAAT TCTATACGAG
  TTTTAGGATC AACATATCAG TTTTGGTAGA AAAACAGCCA AGAATTTTAA TTAGTTTGTT
  TGGTTACAGG CAGGGTGTAA CTCATGTTTT CCTAGCTGAT CTTGAATTCT CAAGAGATCT
  GTCTGCCTAC TAAGGCCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms
ss61031650	NES16093354	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A
ss145293412	ENSMUSSNP1819998	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms
rs48631315					SNP	G	G	G	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61031650	NES16093354	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89815130 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67722	transcription start site region 67722	1827 bp downstream
Tssr67723	transcription start site region 67723	374 bp downstream
Tssr67724	transcription start site region 67724	130 bp upstream
Tssr67725	transcription start site region 67725	175 bp upstream
Tssr67726	transcription start site region 67726	188 bp upstream
Tssr67727	transcription start site region 67727	252 bp upstream