rs48632233 SNP Detail

Summary

• ID
  rs48632233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191710917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTTAGAC ACTGGTTTGA
  GGGATGAGCA GGTCTTTGTC AGGTAGGTAA AAGACCCACA GGTCGGGCAG GTTTACACCT
  GGCTTGGTGG TGTAGAGATA ATTTTTTTAA TGCCAAAAAG AAACAAGGAG AACTTGCAGC
  TTGTGACGTT GACTTTGGCC CTGAGAAAAG CAGAATCAGT CAGAGGGGTG AACAGCTACA
  Y
  GTGCTCTCAG GCCTCTGCCA GGACCCAGGG TCTGGCCTCA GCTGATACAG CCTGCTCCAA
  GAGGTGACCT CTGCTCTGGG ACAGCCTGGG TCAGGTGACC TTAGGCCCTA GGTCCCCAGG
  AACAGAACCC TTCCTAGCCT GAAGATATTC AGCTGAGCTG TGAGATCCCA GTTATACAAG
  GGGGGAGCCT CAGCTGCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60361400	NES15865103	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48632233					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60361400	NES15865103	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191710917 () rs orientation: forward

Symbol	Name	Function Class
Gm70534	predicted gene, 70534	772 bp upstream
Rd3	retinal degeneration 3	Intron
Rr426276	regulatory region 426276	1573 bp distal
Rr426277	regulatory region 426277	1391 bp distal
Rr426278	regulatory region 426278	331 bp proximal
Tssr10797	transcription start site region 10797	1567 bp downstream
Tssr10798	transcription start site region 10798	1556 bp downstream
Tssr10799	transcription start site region 10799	1511 bp downstream
Tssr10800	transcription start site region 10800	697 bp downstream
Tssr10801	transcription start site region 10801	665 bp downstream