rs48632644 SNP Detail

Summary

• ID
  rs48632644
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92473081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTGATCTC CGTTCTTCAG TGTAGCACTG TGCCAAAGAA
  ACACCAGTGA GCTTTCTCCC CCCAGTAACA ACTTCATAAT TCTTAGTAGA AACAGTGGAG
  R
  AAAACGTGCA TTTTATTGAG TTTTCCAGTG AAACCACTTA AAATGTGGCA AAACGTCTTC
  CTAAGATTAA CAGGTATATT TTTAAAAACT GTAGCAGAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148831457	ENSMUSSNP4550816	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48632644					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92473081 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Rr614603	regulatory region 614603	1585 bp distal
Tssr1547	transcription start site region 1547	1580 bp downstream
Tssr47288	transcription start site region 47288	1443 bp downstream
Tssr47289	transcription start site region 47289	1433 bp downstream
Tssr47290	transcription start site region 47290	1418 bp downstream
Tssr47291	transcription start site region 47291	1376 bp downstream
Tssr47292	transcription start site region 47292	95 bp downstream
Tssr47293	transcription start site region 47293	1543 bp upstream
Tssr47294	transcription start site region 47294	1580 bp upstream
Tssr51867	transcription start site region 51867	1514 bp upstream
Tssr51868	transcription start site region 51868	1468 bp upstream
Tssr51869	transcription start site region 51869	1426 bp upstream
Tssr51870	transcription start site region 51870	1376 bp upstream
Tssr51871	transcription start site region 51871	1341 bp upstream
Tssr51872	transcription start site region 51872	88 bp upstream
Tssr51873	transcription start site region 51873	1568 bp downstream
Tssr51874	transcription start site region 51874	1593 bp downstream