rs48633499 SNP Detail

Summary

• ID
  rs48633499
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27209545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACTTCTC CATGAGCCAG
  CACTACCTGT CCAGAACCTT ACTATGGACC AGACTTCTAG TGAACTGACC CCAGCTGGGC
  TTTCAAGACC CCGGAGTCTA ACCTAGCCCT TGGCTGCAGC CACCAGGGCA ATGTTCTGGC
  CTAAGTCTGA AGCTGTTACA ACCTGAGCTA ATGTGATTCT CTATACCAGA TACTGCTCTA
  Y
  GACTCCTGCA CAGACTCAGC GGTTCCACAA GCCGCTTCTA CAATGTGCTG TGGCTATGAC
  CCAAATCTCA TATCGCTTTT AGGAAGGCAA ACCATTCTCA TCTGTGTCAA AAAGCCCTAT
  GCCAGGGATG CAAACACAAA TGCGAACCAG GGCCTAATTC TGTCCCCTAA GAATTGCAAG
  CTTGTTGCAG CAAGGATAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52338283	NES15368999	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48633499					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52338283	NES15368999	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27209545 () rs orientation: forward

Symbol	Name	Function Class
Silc1	sciatic injury induced lincRNA upregulator of SOX11	within coordinates
Tssr115957	transcription start site region 115957	901 bp downstream
Tssr115958	transcription start site region 115958	931 bp downstream
Tssr115959	transcription start site region 115959	952 bp downstream