rs48635167 SNP Detail

Summary

• ID
  rs48635167
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46991784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCCTTCA ATTTTCCTCA
  TCCCCCCAAC CCATCCCAGG CTACCTGCCA GGCCGGGCCG GGGTGGGGCC GCGGGTCCTC
  GCGCTGCCAG CAGCCTAGAA CCCGTTGCCC GCCAACCGAT TCCTCGGTCC CCAACGAGAT
  AAACACTGCC AGACTTCGTC CTTCCGGCGG GCAGCGGGAC GCGCACGTGC AGTGAGAATT
  S
  CCGGCCCGAC AGCTTCAGGG ACTTGTAGTC CACGAATTAC CCCAGGGCCG AAAGATGGGG
  AGCGGGTGGG CGGGGCCGGT TTGTGCGCAT GCGCAGAACA CCAGTTCACG TCGCACGCCT
  GAGGGTCACT GGGTAATGTA GTTCTTTGTG GTCCGGGCAG GGGATGGCGG AGGCGGGGCA
  AGAGGCGGAC TTGTCCTCGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62758064	NES17350946	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	C	G	G	G	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48635167					SNP	G	G	G	G	C	G	C	G	G	G	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62758064	NES17350946	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46991784 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9239	CpG island 9239	within coordinates
Klhdc3	kelch domain containing 3	within coordinates
Mea1	male enhanced antigen 1	within coordinates
Rr405317	regulatory region 405317	within coordinates
Rr527794	regulatory region 527794	1509 bp distal
Rr527795	regulatory region 527795	within coordinates
Tssr5136	transcription start site region 5136	77 bp upstream
Tssr5137	transcription start site region 5137	77 bp downstream
Tssr144872	transcription start site region 144872	380 bp downstream
Tssr144873	transcription start site region 144873	122 bp upstream
Tssr144874	transcription start site region 144874	180 bp upstream
Tssr144875	transcription start site region 144875	1118 bp upstream
Tssr144876	transcription start site region 144876	1177 bp upstream
Tssr148367	transcription start site region 148367	124 bp upstream
Tssr148368	transcription start site region 148368	102 bp upstream
Tssr148369	transcription start site region 148369	83 bp upstream
Tssr148370	transcription start site region 148370	24 bp upstream
Tssr148371	transcription start site region 148371	within coordinates
Tssr148372	transcription start site region 148372	12 bp downstream
Tssr148373	transcription start site region 148373	1043 bp downstream
Tssr148374	transcription start site region 148374	1055 bp downstream