rs48636746 SNP Detail

Summary

• ID
  rs48636746
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:116590574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTCTTTG ATGGTCTCTG
  CATGGAAATC CTACAGATAA ACCCTTACTC TTTCTTGTTT TCTGACACAC ACACACATGT
  GTATACATAT ACATATATGT ATATTTGAGC AAAGTATATC TTGCAGAAAC ATGTGTTGAA
  TAAATAAATA CATATGAGGG ATAGGAACAG GTTGTCATCC GATGCACCAC ATTTGCTCCT
  W
  TAAGGGAAGG AAGACAGATG GGTCAAGGAC ACAAGAAAAC CCACAGAACC AACTAACTTG
  AGCTCATAGG GGCTCACAGA GACTGAAGTG GCAACCATGT AGGGGGTCTG GATGGGTCTG
  ACCTAGGCCC TTTGCATATA TGTTAAGTTG TGCCCTTTGT CTTGTAGAAC TCCTAACTGT
  GGCAGCAGGA CTGTCTCTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145742580	ENSMUSSNP5758790	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48636746					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:116590574 () rs orientation: forward

Symbol	Name	Function Class
Rr159555	regulatory region 159555	1827 bp proximal
Rr381374	regulatory region 381374	within coordinates