rs48636842 SNP Detail

Summary

• ID
  rs48636842
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100978893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGC GTGTGAGTCT GTGTGCACGT
  R
  TATCTAGGAG AGGGTGGGGT ACCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148482197	ENSMUSSNP3437360	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss325085182	CHEV_15_100911443	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48636842					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100978893 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7765	CpG island 7765	1482 bp distal
Gm53912	predicted gene, 53912	within coordinates
Gm62031	predicted gene, 62031	967 bp downstream
Rr509900	regulatory region 509900	1955 bp distal
Rr509901	regulatory region 509901	1904 bp distal
Rr509902	regulatory region 509902	834 bp proximal