rs48639578 SNP Detail

Summary

• ID
  rs48639578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58269088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTAAGGA GGGTCATCTG
  CTGCTGGCCC GAGGGACTGT TGTTGGAAGA CTTCAGGTGT CCTTGGGGCC TGCCTTGTAG
  GGAAGCAGGT TCTAAGAGAA GCAAGCCAGC ATTCTAGAGG AGGGGAAGGC CAAGGAAGGG
  CAGTGAAAGA TAGCAGAGAG CAGGGGAGGG TGGGAGCAGC TGCAGGTGCC TGTGCTAACT
  R
  CCCTATAGAA GGTCGGTGGA GTCTGGCATC ACAATTGATG GGCAGATGCT CTAGCGCTCT
  CCAGCAAGGC AGGAGTAAGG TTGATAACCT AATTAAACTC CAAATCACAG AGCATGATCC
  AAAGCCGGGA AGAAAGGGAG GCAGGAAACC TTGCAGCTTC TCCCTAACGC AGGAGGGGGT
  ACAGTCTACC TTAAGCGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61405429	NES16792469	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48639578					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61405429	NES16792469	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58269088 () rs orientation: forward

Symbol	Name	Function Class
D9Mit232	DNA segment, Chr 9, Massachusetts Institute of Technology 232	727 bp proximal
D9Mit232.1	DNA segment, Chr 9, Massachusetts Institute of Technology 232.1	846 bp proximal
D9Mit248	DNA segment, Chr 9, Massachusetts Institute of Technology 248	754 bp proximal
Gm53527	predicted gene, 53527	654 bp upstream
Tbc1d21	TBC1 domain family, member 21	within coordinates