rs48639847 SNP Detail

Summary

• ID
  rs48639847
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24339291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAACTTTT AAGACTAAAC
  TTAGCAGGGA GCTGAGAGAG GCAAAGGCAA CGTGTGTTTG AGTTTTGCTC ACAGATGTAT
  CTCTGTTAAA GCCTTTGTTC CAAGACAAAT CTGGAGCTTA GGTTTCACCC AAAAAACAAA
  CAAACAAACA AAAAACCACC CTTCTCAAAG CATATTATGG AAATACAGTC CGTCACGGGC
  R
  GATGCCAGCA GCACAATGCT TTGCAGAAAG TGGGACCAGA GTTGAGATGT TCAGACACAC
  GAGTGCACAG CCTTCTGTTT CATCTCAGGC TTCACTGCTC CTGTCTTTTT TTCCAGAAGT
  CCCTAAACTT TATTTGGGCT ATGCCAACCC CTATCTGTCC AATGATAGAC CTTTCTGTGT
  CTCCCTCTTG CAGCCAACGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60982640	NES16150963	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48639847					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60982640	NES16150963	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24339291 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18555	CpG island 18555	724 bp distal
Cpgi18556	CpG island 18556	163 bp proximal
Gm26550	predicted gene, 26550	1950 bp upstream
Lypd3	Ly6/Plaur domain containing 3	within coordinates
Rr167239	regulatory region 167239	890 bp distal
Rr172826	regulatory region 172826	585 bp proximal
Tssr65020	transcription start site region 65020	1083 bp downstream
Tssr65021	transcription start site region 65021	1069 bp downstream
Tssr65022	transcription start site region 65022	333 bp upstream