rs48640617 SNP Detail

Summary

• ID
  rs48640617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:36827546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTGATG ATCCACTAAC
  CTTTCATCCC ATTGCTTGAA AAACAGATAC CTACTAGAAG AGACAGAAAG CTCCAAGTGG
  ACTCTTCAGG GCAACTGGAT CTACTTCTAT CCTCTACGTT GTCCCCAAAC AGAGGTTGTC
  GCCTCAGTGG CTCCCTAACT TAAGTGACCC GAAGTCTACA TACCCACTAC CATGTAGCTC
  Y
  TCCTGTTGGC TGAGGAACGC TGGTCTCTAG TCTCTTACCC ACAGCAGCTG GTTCTGCAGC
  ATCTTCTCCT GCTTGCTCTC AGCTCACAGC TCCATTGCTT ATTATTTACC ATATTTCCTA
  ACCCATTCAT GGACCCCTGG TGTCCTTGTC CCCAAACTCT GCCCAACCCA GTGTTTTGTT
  GCTCTACAAA CTGTCAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61137488	NES16647934	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48640617					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61137488	NES16647934	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:36827546 () rs orientation: forward

Symbol	Name	Function Class
D5Ertd579e	DNA segment, Chr 5, ERATO Doi 579, expressed	Intron
Gm25767	predicted gene, 25767	1456 bp upstream
Rr610244	regulatory region 610244	239 bp distal
Rr610245	regulatory region 610245	1500 bp proximal