rs48641141 SNP Detail

Summary

• ID
  rs48641141
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:94884605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGCCAGG CCCCTGGTGG
  CACCACAGGC CAGGACTCCA CTGTGGTCCC AGGTAGCATC CCCAGCTACT CACATCAGGC
  TGTTCCTCAC CACCCTTGAG TCTCCAGTTC TGCCTCTCCC TACTGTGCCC ACATCATTCT
  GTTTCTCTTT CTCTTCCGTT TCTCCAACAC TGGCTTCCTC TGCAAAGCAC TGGAATGGTG
  R
  TCATGTCCCA GCTAACTCCC TGTCCTGGCT GCAAGATGCA AGAGTTGCAG TCCTCTTGGG
  CTCCTTCCTT GCCTAGGCTC ACCCTTTGAC CCCATGCGGA GTCATGTGTC ACGCTGCCAG
  AGCTATGCAA CCCCAGGTGG GACTTATGTC TCCTCCTAGC CCCCCACCTT GGGAGCCCAT
  CGGGCCTGCA CAGCACCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63596459	NES17038039	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48641141					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63596459	NES17038039	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:94884605 () rs orientation: forward

Symbol	Name	Function Class
Gm23129	predicted gene, 23129	283 bp downstream
Gm52203	predicted gene, 52203	1877 bp downstream
Rr391133	regulatory region 391133	within coordinates
Tmem117	transmembrane protein 117	within coordinates