rs48641684 SNP Detail

Summary

• ID
  rs48641684
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116388203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACCTAGTG ATCTTTTTCA
  AGCACTCCTT TATAAAAATA ATCACTTCCC CTGAGGATGG GGGACTAGCG GAAGGAAGGA
  TGAGTGTAAG GGTCTCTGAG ACAGCAGAGG GAGCTTTTAG TACAAGAAAG CAATGCTCCT
  CGGGGGCTCC TCGCGGCTCC GAGCGGTGGG CAGAACTGCA TTTACTTAAA TCCATGGGAC
  S
  GAAGCAGGAA CCTGTCAAAG GGGCGAGACT GGGGTCCAGC ACCCACAGAC CCGCGACTCC
  CAGGAAGGGA GGGCGATAGC TGACCTCGGC GGAGCCAGCG TGTTCGCCAC AGAACCTTTT
  CCCCGCGGCC GCCACCATCC TGCAGAAGCG CTTCTTCTTT TCTACGAAGT AGTTGCATCT
  GCCGTCGATG GGAAATCCGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss60436760	NES15940861	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G		C	C
ss320895809	CHEV_3_116297472	CHEVERUD	SCREENING_POP	f	SNP							G			C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs48641684					SNP	G	G	G	G	C	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60436760	NES15940861	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116388203 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13737	CpG island 13737			within coordinates
Rr397965	regulatory region 397965			209 bp upstream
Rr583746	regulatory region 583746			83 bp distal
Rr583747	regulatory region 583747			193 bp proximal
Rr583748	regulatory region 583748			274 bp proximal
Rr583749	regulatory region 583749			467 bp proximal
Rr583750	regulatory region 583750			635 bp proximal
Sass6	SAS-6 centriolar assembly protein			428 bp upstream
Trmt13	tRNA methyltransferase 13			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
Tssr31360	transcription start site region 31360			405 bp upstream
Tssr35316	transcription start site region 35316			262 bp downstream
Tssr35317	transcription start site region 35317			294 bp downstream