rs48642509 SNP Detail

Summary

• ID
  rs48642509
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54043536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTA GTTAGCTCTA TAAAGTTTTG
  C
  TTTCCTGTTC ATTATATATG ACAGC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss139548856	ENSMUSSNP5316004	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324632395	CHEV_14_54425754	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48642509					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54043536 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Rr492108	regulatory region 492108	1407 bp distal
Rr492109	regulatory region 492109	1636 bp distal
Rr492110	regulatory region 492110	105 bp proximal
Rr492111	regulatory region 492111	319 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Trav17	T cell receptor alpha variable 17	560 bp upstream
Tssr125501	transcription start site region 125501	384 bp upstream
Tssr125502	transcription start site region 125502	418 bp upstream